Publications

Found 15 results
Author Title Type [ Year(Asc)]
Filters: Author is Trey E. Ideker  [Clear All Filters]
2010
Srivas, R., Hannum G., Guénolé A., van Attikum H., Krogan N. J., Karp R. M., et al. (2010).  Genome-Wide Association Data Reveal a Global Map of Genetic Interactions among Protein Complexes.
2009
Hannum, G., Srivas R., Guénolé A., van Attikum H., Krogan N. J., Karp R. M., et al. (2009).  Genome-Wide Association Data Reveal a Global Map of Genetic Interaction Among Protein Complexes. PLoS Genetics. 5(12), 
2008
Suthram, S.., Beyer A.., Karp R. M., Eldar Y.., & Ideker T. E. (2008).  E-QED: An Efficient Method for Interpreting eQTL Associations Using Protein Networks. Molecular Systems Biology.
2006
Scott, J., Ideker T. E., Karp R. M., & Sharan R. (2006).  Efficient Algorithms for Detecting Signaling Pathways in Protein Interaction Networks. Journal of Computational Biology. 13, 133-144.
2005
Sharan, R., Sutharan S., Kelley R. M., Kuhn T., McCuine S., Sittler T., et al. (2005).  Conserved Patterns of Protein Interaction in Multiple Species. Proceedings of National Academy of Science. 102(6), 1974-1979.
Scott, J., Ideker T. E., Karp R. M., & Sharan R. (2005).  Efficient Algorithms for Detecting Signaling Pathways in Protein Interaction Networks. Proceedings of the 9th Annual International Conference on Research in Computational Molecular Biology (RECOMB'05). 133-144.
Sharan, R., Ideker T. E., Kelley B. P., Shamir R., & Karp R. M. (2005).  Identification of Protein Complexes by Comparative Analysis of Yeast and Bacterial Protein Interaction Data. Journal of Computational Biology. 12(6), 835-846.
2004
Sharan, R., Ideker T. E., Kelley B. P., Shamir R., & Karp R. M. (2004).  Identification of Protein Complexes by Comparative Analysis of Yeast and Bacterial Protein Interaction Data. Proceedings of the 8th Annual International Conference on Research in Computational Molecular Biology (RECOMB'04). 282-289.
Sharan, R., Ideker T. E., Kelley B. P., Shamir R., & Karp R. M. (2004).  Identification of Protein Complexes by Comparative Analysis of Yeast and Bacterial Protein Interaction Data. Proceedings of the 8th Annual International Conference on Research in Computational Molecular Biology (RECOMB'04). 282-289.
Sharan, R., Ideker T. E., Kelley B. P., Shamir R., & Karp R. M. (2004).  Identification of Protein Complexes by Comparative Analysis of Yeast and Bacterial Protein Interaction Data. Proceedings of RECOMB 2004. 282-289.
Kelley, B. P., Yuan B., Lewitter F., Sharan R., Stockwell B. R., & Ideker T. E. (2004).  PathBLAST: A Tool for Alignment of Protein Interaction Networks. 32, W83-W88.
2003
Kelley, B. P., Sharan R., Karp R. M., Sittler T., Root D. E., Stockwell B. R., et al. (2003).  Conserved Pathways Within Bacteria and Yeast as Revealed by Global Protein Network Alignment. Proceedings of the National Academy of Sciences of the United States of America. 100(20), 11394-11399.
Sharan, R., Ideker T. E., Kelley B. P., Shamir R., & Karp R. M. (2003).  Identification of Protein Complexes by Comparative Analysis of Yeast and Bacterial Protein Interaction Data.
2000
Ideker, T. E., Thorsson V., & Karp R. M. (2000).  Discovery of Regulatory Interactions Through Perturbation: Inference and Experimental Design. Proceedings of Pacific Symposium on Biocomputing (PSB 2000). 302-313.
Ideker, T. E., Thorsson V., & Karp R. M. (2000).  Discovery of Rgulatory Interactions Through Perturbation: Inference and Experimental Design.